PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007436.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 459aa    MW: 50443.6 Da    PI: 7.854
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007436.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19278326355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+g
  CCG007436.1 278 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYMLRG 326
                  8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-30276336No hitNo description
SMARTSM003804.0E-35277340IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-22277335IPR016177DNA-binding domain
PROSITE profilePS5103222.247277334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-31277335IPR001471AP2/ERF domain
PRINTSPR003672.3E-10278289IPR001471AP2/ERF domain
PfamPF008473.9E-12278326IPR001471AP2/ERF domain
PRINTSPR003672.3E-10300316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEDQFPKIET FMHKELVAAY CSFHGMATRS KYFGDPTIWG ALSGAACRVE DGNSGMKSPS  60
PSSSERLFSS SESSSSADDQ VSGTDLIGNI PGLGKQDVVK KDHESCFMSG LNSINALGAN  120
SISDQTIKES SIPVNFLEPF PTLNNQAQVP EPPSPSSLSK SPNLTLFLQE PAAASLLHPS  180
KQVLDPPGKD QRCEPAVSLF PNTSFSMPQL GQIHCQPSNE WFKINQTLAN CSTKGFNDYW  240
LSTTKTQPMK YSGRRLQNHH QKPSFSSAST STSPGKLFRG VRQRHWGKWV AEIRLPRNRT  300
RVWLGTFDTA EDAAIAYDTA AYMLRGDYAH LNFPDLKHQL KSNSLNRTTA ALLEAKLQAI  360
SSQGNNISCQ NKHISDPPPP PSPNKINVHA TDATKLKGLS QNTTRKQWQF ELRGKSGGEV  420
IEDKKGQEVV ASDIDSIQLS RMPSLDMDMI WDALLVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21273334163ATERF1
3gcc_A7e-21273334163ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559440.0EF155944.1 Populus trichocarpa RAP2-like protein (RAP2L3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041893.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like isoform X1
TrEMBLA9PL930.0A9PL93_POPTR; RAP2-like protein
STRINGPOPTR_0017s08250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-63ERF family protein