PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007534.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 545aa MW: 56723.6 Da PI: 8.1082

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007534.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CCG007534.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	11.1	0.0013	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + CCG007534.1 144 WKCDKCSKKYAVQSDWKAHSKIC 166 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.76E-7	67	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.1E-4	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.76E-7	139	164	No hit	No description
SMART	SM00355	150	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MPVDLDSSPA ASGEASVSSS GYQPPQQQTP SKTVAIAKKK RNLPGMPVDP EAEVIALSPK 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS SKEVKKRVYV CPEPTCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALADESA RAQTQTPNPN PNHNPESDPK VQVDSSPTPA PLPPPQVDSS 240 PAPAPLPPPV APDLGPGLSQ APPGLAQSAG MTPSPVLAIQ SPGFPDNPTQ MIEEAPAGAP 300 MPATVTAGFN GSCSSSTSSS SNGSSTSSVF ASLFASSTAS GSLQTPQTPA FTDLIHAMAH 360 PDRPTDLAPS SSAEPISLCL STHHGSSIFG TAGQERRQYA PPPQPAISAT ALLQKAAQMG 420 AAATNASLLR GLGIVSSSSS SAQQDNTQWG HRQMEPENAS HAAGLGLGRP CDGGSGLNEL 480 MMGTPSIFGP KHATLDFLEL GMAAGGNPSG GLSALITSIG GGLDVAAAAA SFGGGEFAGK 540 DIGRS

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MPVDLDSSPA ASGEASVSSS GYQPPQQQTP SKTVAIAKKK RNLPGMPVDP EAEVIALSPK  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS SKEVKKRVYV CPEPTCVHHD  120
PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS  180
RRDSFITHRA FCDALADESA RAQTQTPNPN PNHNPESDPK VQVDSSPTPA PLPPPQVDSS  240
PAPAPLPPPV APDLGPGLSQ APPGLAQSAG MTPSPVLAIQ SPGFPDNPTQ MIEEAPAGAP  300
MPATVTAGFN GSCSSSTSSS SNGSSTSSVF ASLFASSTAS GSLQTPQTPA FTDLIHAMAH  360
PDRPTDLAPS SSAEPISLCL STHHGSSIFG TAGQERRQYA PPPQPAISAT ALLQKAAQMG  420
AAATNASLLR GLGIVSSSSS SAQQDNTQWG HRQMEPENAS HAAGLGLGRP CDGGSGLNEL  480
MMGTPSIFGP KHATLDFLEL GMAAGGNPSG GLSALITSIG GGLDVAAAAA SFGGGEFAGK  540
DIGRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	140	208	3	71	Zinc finger protein JACKDAW
5b3h_F	3e-35	140	208	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999960.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
Swissprot	Q9LVQ7	1e-179	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	B9MXR2	0.0	B9MXR2_POPTR; Uncharacterized protein
STRING	POPTR_0005s12710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-147	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]