PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007610.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 188aa    MW: 20646.2 Da    PI: 4.8179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007610.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-191565155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr++k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  CCG007610.1 15 PRYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYEMPEMAAAAYDVAALHLRG 65
                 68*******9.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-131565IPR001471AP2/ERF domain
CDDcd000183.84E-211574No hitNo description
SMARTSM003801.5E-351679IPR001471AP2/ERF domain
PROSITE profilePS5103222.9721673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-311674IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-211674IPR016177DNA-binding domain
PRINTSPR003677.1E-131728IPR001471AP2/ERF domain
PRINTSPR003677.1E-135575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEGRTRDGHL GISPPRYRGV RQRKWGKWVS EIREPGKKTR IWLGSYEMPE MAAAAYDVAA  60
LHLRGRGAQL NFPEMVDSLP RPASSRTEDV QMAAQEAASL FRRPIKCSEG VSGSSSGGGG  120
SLGPVRVGLS PSQIQAINEA PLDSPKMWTE LAGALLLDEP VAMGDDIDVE LSDEWGEMEH  180
EHDSIWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-171778668ATERF1
3gcc_A2e-171778668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559380.0EF155938.1 Populus trichocarpa TINY-like protein (TINYL19) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000046.11e-135PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ288e-50ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA9PL881e-107A9PL88_POPTR; TINY-like protein
STRINGPOPTR_0013s10330.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.15e-44ERF family protein