PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007654.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 508aa MW: 55375.8 Da PI: 5.7388

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007654.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.7	1.3e-24	255	310	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + gCpv+ r+ ed +++++tYeg+Hnh+ CCG007654.1 255 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpGCPVQ----RCLEDMSILITTYEGTHNHP 310 58************************999965....5777899************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-26	240	312	IPR003657	WRKY domain
SuperFamily	SSF118290	6.28E-23	248	312	IPR003657	WRKY domain
PROSITE profile	PS50811	24.088	250	312	IPR003657	WRKY domain
SMART	SM00774	3.7E-30	255	311	IPR003657	WRKY domain
Pfam	PF03106	2.6E-21	256	310	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MDTDLSLKID AESEGEEDGD EERRHGEKGG GNHQEEEVDR QNIQDISEAA GAATTTGGGG 60 GGAEDDSSLL ENMKTEELSG LQMEISRMKE ENKVLRRTVE QTMKDYHDLR IRFASFQQNM 120 DQKKDPQISL GLDVKDNKAV QEVPKAIPRQ SDSSYIQRHQ AVASTKGDSV GEGELGLSLR 180 LQITSTSQQE REEDMEENNK EDQTANHAPT ISQNNNNNSN QRTDLGGAGI TAHGASLANR 240 KARVSVRARC QAATMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVSPGCPVQ RCLEDMSILI 300 TTYEGTHNHP LPVGATAMAS TASAAASFML LNSSNPLSDG MISTGQANSL PYHAWNPQYS 360 SNFRSINPND PSKGIVLDLT HDRDRSLLQH PMMASSSQYS SSSASHNQYP SSFSNWMQSR 420 SSSYQNSAAN VHGSNFAGHR VQEEKLLMAE NVTAIASDPK FRVAVAAAIT SLINKENSSS 480 HPIEPSLISR DGERGSPTCK QQQQLSGP

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MDTDLSLKID AESEGEEDGD EERRHGEKGG GNHQEEEVDR QNIQDISEAA GAATTTGGGG  60
GGAEDDSSLL ENMKTEELSG LQMEISRMKE ENKVLRRTVE QTMKDYHDLR IRFASFQQNM  120
DQKKDPQISL GLDVKDNKAV QEVPKAIPRQ SDSSYIQRHQ AVASTKGDSV GEGELGLSLR  180
LQITSTSQQE REEDMEENNK EDQTANHAPT ISQNNNNNSN QRTDLGGAGI TAHGASLANR  240
KARVSVRARC QAATMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVSPGCPVQ RCLEDMSILI  300
TTYEGTHNHP LPVGATAMAS TASAAASFML LNSSNPLSDG MISTGQANSL PYHAWNPQYS  360
SNFRSINPND PSKGIVLDLT HDRDRSLLQH PMMASSSQYS SSSASHNQYP SSFSNWMQSR  420
SSSYQNSAAN VHGSNFAGHR VQEEKLLMAE NVTAIASDPK FRVAVAAAIT SLINKENSSS  480
HPIEPSLISR DGERGSPTCK QQQQLSGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-19	242	314	1	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011046138.1	0.0	PREDICTED: probable WRKY transcription factor 9
TrEMBL	B9GF77	0.0	B9GF77_POPTR; Uncharacterized protein
STRING	POPTR_0001s21580.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9320	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	2e-61	WRKY DNA-binding protein 9