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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG007692.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | LSD | ||||||||
| Protein Properties | Length: 148aa MW: 15725.3 Da PI: 7.937 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 42.2 | 1.3e-13 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL YP GA+sV+Ca+C++V
CCG007692.1 44 CSGCRNLLLYPVGATSVCCAVCNAV 68
************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 1.0E-12 | 41 | 71 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 1.5E-10 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 148 aa Download sequence Send to blast |
MPVPLAPYPT TPAPYAPPAP APAPPPPPPP PLPPANGAQS QLVCSGCRNL LLYPVGATSV 60 CCAVCNAVTA VPPPVGLRRL PHLTDVHPWS NERAVFLLSY SQSSLGGKSS GTRQLWELQD 120 AVDVPIWSTV CEMCCLHFCH TSWGLIKR |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CU232247 | 1e-120 | CU232247.1 Populus EST from mild drought-stressed leaves. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011014158.1 | 6e-41 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_011014159.1 | 6e-41 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_011014160.1 | 6e-41 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_011014161.1 | 6e-41 | PREDICTED: protein LOL1-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF28118 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G32540.3 | 9e-08 | lsd one like 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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