PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007746.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 146aa MW: 15966.3 Da PI: 8.1231

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007746.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	148.1	2.3e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lq+q+++l+++lal++ CCG007746.1 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQKQIDSLQTQLALAQ 110 7**********************************************************************************************999 PP DUF260 99 ee 100 +e CCG007746.1 111 AE 112 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.286	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-46	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MKESGRKLGA LSPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE 60 LPEHQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQKQID SLQTQLALAQ AEVVHLRVRQ 120 FTSSSNPGAM DMAVDQATMG ESLWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-51	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-51	9	114	7	112	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030434.1	1e-106	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	1e-72	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	B9HGW4	1e-103	B9HGW4_POPTR; Uncharacterized protein
STRING	POPTR_0007s08290.1	1e-103	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-75	LOB domain-containing protein 4