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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG007769.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 258aa MW: 29293.5 Da PI: 11.0666 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 16.2 | 3.1e-05 | 78 | 98 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C +C+ +Fs+ L +Hi +H
CCG007769.1 78 CRICDHVFSSTQALISHIESH 98
******************999 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50157 | 10.076 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 258 aa Download sequence Send to blast |
MPAPCITKPK QPDYPHISRC MRPYGPRCTW IVSLSPCRFL HGIEPLFAVI FDCMAGFGWS 60 LRHGHGSKRP LTPSQIACRI CDHVFSSTQA LISHIESHTV EERTALRRQN GLSLFSSSHA 120 EPFASPFSFS LSTPTRRPQT GPLGRNRYNF PSSAERKHVF SDRRTPQNLV SGAKPFTPRA 180 QLSRVPRNNK YASVGSQHIP LTFQAQPRVI DEPRDIHFTK PFLQQLERPF SSKARFQESN 240 GHRRSKSHVE TLDLTLKL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011030483.1 | 1e-174 | PREDICTED: uncharacterized protein LOC105129916 | ||||
| TrEMBL | B9HKH6 | 4e-65 | B9HKH6_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0010s08100.1 | 1e-131 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF14890 | 8 | 12 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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