PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007777.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 86aa MW: 9871.67 Da PI: 10.3968

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007777.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	4.9e-07	5	37	1	34
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 +g WT e d++l+ +++ +G +W++ ++ g + CCG007777.1 5 KGQWTLEADQILISYIQNYGHSNWRALSKQAG-T 37 799**************************999.5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.737	1	47	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.66E-7	1	45	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-10	4	37	IPR009057	Homeodomain-like
Pfam	PF00249	5.9E-6	5	39	IPR001005	SANT/Myb domain
CDD	cd00167	0.00112	8	37	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MRLTKGQWTL EADQILISYI QNYGHSNWRA LSKQAGTITE MREELQVPMD KLFAARVGFT 60 LAAKLKRSYI LSLPLPKILN LPKLIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-12	myb domain protein 15