PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008094.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 145aa    MW: 16401.8 Da    PI: 9.4331
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008094.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-172862135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ C+tt Tp+WR gp g+++LCnaCG+++rkk++
  CCG008094.1 28 CTDCQTTRTPCWRGGPAGPRSLCNACGIRQRKKRR 62
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.7672258IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-132283IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-122362No hitNo description
Gene3DG3DSA:3.30.50.101.9E-132562IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.50E-112762No hitNo description
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
PfamPF003203.0E-152862IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDLRTKGPES EDMDNTHPSK CNEIKRRCTD CQTTRTPCWR GGPAGPRSLC NACGIRQRKK  60
RRALLGLDRG GPERSRENMA KGSNSSKLGV SLNLDLMGFM RDGMFQEDWK RKLGEEEQAA  120
ILLMALSCGS VFAWYKKDEG KHFYP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482470.0EF148247.1 Populus trichocarpa x Populus deltoides clone WS01312_C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042193.11e-105PREDICTED: GATA transcription factor 16-like
RefseqXP_011042194.11e-105PREDICTED: GATA transcription factor 16-like
TrEMBLB9GSF07e-99B9GSF0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20080.11e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-34GATA transcription factor 16