PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008218.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 369aa    MW: 40828.4 Da    PI: 7.6081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008218.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75e-33218276159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK vk+s++prsYYrCtsagC vkk+vers++d ++v++tYeg+H h+
  CCG008218.1 218 LDDGFRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDSSIVVTTYEGQHIHP 276
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-34203278IPR003657WRKY domain
SuperFamilySSF1182906.15E-29210278IPR003657WRKY domain
PROSITE profilePS5081132.592213278IPR003657WRKY domain
SMARTSM007745.7E-40218277IPR003657WRKY domain
PfamPF031061.5E-26219276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNEMKENNNI SSVCTNSMEK REGKKELTRT TILKTENFTM ANSSFITPPA TTSDIDQMLS  60
VFALSTTATP PPPPLNSIFD MMPCDIIGGD QKAGSLGFID LLDINQDFGT AASLFDWFAQ  120
NPIVGSQQQQ TFVPSPASTL PETSEVLNNP ATPNSSASIS SSSNEAGNDA FQQVKTGDQE  180
EKHDHDKTKK QLKPKKKNQK RQREPRFAFM TKSEVDHLDD GFRWRKYGQK AVKNSPYPRS  240
YYRCTSAGCG VKKRVERSSD DSSIVVTTYE GQHIHPSPIT PRGSVGILAD STGFGAATSS  300
FVIPQTQYQQ HAYMYSSSPS LNITTSNTSF SPTFSFHQRR SDSPSSLLRD HGLLQDIVPS  360
QMRKEPKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-262112781077Probable WRKY transcription factor 4
2lex_A1e-262112781077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774510.0GQ377451.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014275.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ43e-57WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A3Q9EF090.0A0A3Q9EF09_POPTO; WRKY DNA-binding protein 48
STRINGPOPTR_0010s15750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.14e-52WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]