PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008253.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 245aa    MW: 27727.3 Da    PI: 7.7469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008253.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.4e-14859148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll++ v+++G ++W+ Ia+  g       t+k+c++rw +yl
      CCG008253.1  8 KGPWTEKEDILLINFVHLFGDRRWDFIAKVSGlkvaGDTTGKSCRLRWVNYL 59
                     79**********************************899***********97 PP
2Myb_DNA-binding55.51.4e-1765110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
      CCG008253.1  65 RGKMTPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 110
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.928359IPR017930Myb domain
SuperFamilySSF466891.94E-276106IPR009057Homeodomain-like
SMARTSM007171.3E-12761IPR001005SANT/Myb domain
PfamPF002491.2E-13859IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-18966IPR009057Homeodomain-like
CDDcd001671.70E-101059No hitNo description
PROSITE profilePS5129427.50860114IPR017930Myb domain
SMARTSM007174.4E-1764112IPR001005SANT/Myb domain
PfamPF002495.1E-1665109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2467113IPR009057Homeodomain-like
CDDcd001672.65E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MMQDEIRKGP WTEKEDILLI NFVHLFGDRR WDFIAKVSGL KVAGDTTGKS CRLRWVNYLH  60
PGLKRGKMTP QEERLVLELH AKWGNRWSRI ARKLPGRTDN EIKNYWRTHM RKKAQERKRA  120
MSPSLSSSNC SSSSNTTTVN SSPLPRTGET SFYDTGGLEQ VVLAGKNGEA VQGGEKGYSM  180
DDIWKDIENT IEPVCDGFSE KGCNCYCPSL ASPSWDYCPD TLWSFGEEEG KIFLPYDDGT  240
TILTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2751141105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-27111451159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-27111451159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346519e-46KM034651.1 Jatropha curcas clone JcMYB031 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000301.11e-160PREDICTED: transcription factor MYB59 isoform X2
SwissprotQ9LX828e-93MYB48_ARATH; Transcription factor MYB48
TrEMBLB9GES41e-150B9GES4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24220.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.16e-92myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]