PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008310.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 725aa    MW: 78088.9 Da    PI: 6.4305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008310.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32310367260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  CCG008310.1 310 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 367
                  7****************************************.***************85 PP
2WRKY103.71e-32521579159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  CCG008310.1 521 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 579
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.41304368IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-29307368IPR003657WRKY domain
SuperFamilySSF1182905.62E-26307368IPR003657WRKY domain
SMARTSM007741.1E-36309367IPR003657WRKY domain
PfamPF031062.9E-25310366IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-37506581IPR003657WRKY domain
SuperFamilySSF1182901.57E-28513581IPR003657WRKY domain
PROSITE profilePS5081138.664516581IPR003657WRKY domain
SMARTSM007741.5E-37521580IPR003657WRKY domain
PfamPF031066.5E-25522579IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSPS PRAFFSAMLG DDINSRIIPE SPGEKRNEGL YLGQPEQMTT  60
GNSEKKDGAQ TSGVQLTELG TFSERKSNFH GGLVERIAAR AGFNAPRLNT ESIRSTESSM  120
NPEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGNTKN SAVGSDPPDK  180
SKGTFFDNID SSSFAFKPMG ESGSRFLGGT SKQSFPSIDV SVSSENAFQS HGVEPAKAQF  240
ESRNSLHFRA EFSKLTTEKD NGGITVADQR TFDTVGGNTE HSSPLAEQQD EEGDQRASGD  300
SMAAGGTPSE DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC PVKKKVERSH EGHITEIIYK  360
GAHNHPKPPP NRRSATGSMD TQLDIPEQAG PQVGTVSDSV WAGTQKGTAA GTPDWRNDNV  420
EVSSSASGAL GPEFGNLSSS VQGQSGTPFE SADAVDASST FSNDEDDDRA THGSVGYDGE  480
GEESESKRRK VETYATEMSG ATRAIREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN  540
PRSYYKCTSA GCTVRKHVER ASHDLKSVIT TYEGKHNHDV PAARNSNHVN SGTSSATAAQ  600
AGVAVQAQVH RPEASQVHNS MTSRFERPPA FGSFRQQLGP SAGFSFGMNQ PGFATMGMAG  660
LGPGQPRMPG MPMHPYLAQQ RAVNEMGLMM PKGEAKVEPV TEANMSLSSN NPTVYQQIMS  720
RLPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37310582878Probable WRKY transcription factor 4
2lex_A9e-37310582878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179330.0JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000388.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_011000389.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLU5G0P40.0U5G0P4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s17230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]