PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008365.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 331aa MW: 36602.9 Da PI: 6.7856

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008365.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	33	92	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s CCG008365.1 33 NQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 92 6899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	31	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MQDTRSIEGG GRLFGGGDGG GGDRKLRPHH HQNQQALKCP RCDSLNTKFC YYNNYNLSQP 60 RHFCKSCRRY WTKGGVLRNV PVGGGCRKTK RSKLKQNTPT TTCDTITASS TTPQELQEQH 120 QQRDHKSSDS HSSSESSSLT ATNNTNANTT AEAVSALSVS SVVSNNLLNG IVESKIFPHG 180 NVNPSFEPSL LEQGSDCGIF SEIGSFTSLI TSTNDLFGFS NMMNQHQPPH QQQGLEHHVQ 240 HNQNQQQWQN HQQQEMTGGG GWINQTVRVE LSALPSSRST KNDDGEFEAL DWPLGSGDQA 300 TSLFDLPNAV DQAYWSQSQW NDQDHPSLYI P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	16	GGRLFGGG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209105	0.0	AC209105.1 Populus trichocarpa clone POP086-P02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000532.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	B9I2T1	1e-163	B9I2T1_POPTR; Uncharacterized protein
STRING	POPTR_0012s12670.1	1e-164	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-37	OBF binding protein 4