PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008498.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 248aa    MW: 28252.8 Da    PI: 6.5064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008498.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+ eEd++l + +   G ++W+ +++  g+ R++k+c++rw +yl
      CCG008498.1 14 RGTWSVEEDQKLMNFILSNGIKCWRHVPKLAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.36.3e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E++ lv+++ +lG++ W++Ia+ ++ gRt++++k++w++
      CCG008498.1  67 RGAFSEAEEDHLVELHSRLGNR-WSKIAAFFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.926961IPR017930Myb domain
SuperFamilySSF466893.38E-2811108IPR009057Homeodomain-like
SMARTSM007173.7E-101363IPR001005SANT/Myb domain
PfamPF002492.4E-121461IPR001005SANT/Myb domain
CDDcd001671.73E-71661No hitNo description
PROSITE profilePS5129426.0162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2665116IPR009057Homeodomain-like
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PfamPF002492.3E-1567110IPR001005SANT/Myb domain
CDDcd001675.62E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRRPCCDKV GLKRGTWSVE EDQKLMNFIL SNGIKCWRHV PKLAGLLRCG KSCRLRWMNY  60
LRPDLKRGAF SEAEEDHLVE LHSRLGNRWS KIAAFFPGRT DNEIKNHWNT RIKKKLKPLG  120
LDPQGHEPPV EQAETNCDAK ESTFAAMKEV VGNINVDQNL LENPVSKVET RLDHDHPCSA  180
HNTSKALRED SDAGWSTFPS LTDLQSDSCL SRSMDEYVLQ ESSSESYWID AYVDSLLSWD  240
GLSFSNLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029614.10.0PREDICTED: protein ODORANT1-like isoform X2
SwissprotP813948e-68MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2K1ZJ861e-179A0A2K1ZJ86_POPTR; Uncharacterized protein
STRINGPOPTR_0008s18110.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2812333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.15e-78myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]