PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008602.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 197aa MW: 22042.9 Da PI: 11.3916

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008602.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	27	47	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+++F++ L Hi +H CCG008602.1 27 CRICDRVFTSVQALIDHIESH 47 ******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.349	25	52	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MTGFGWSLRH GNTLGSKRPL LPSQIACRIC DRVFTSVQAL IDHIESHMVE DVETARWKNG 60 LSFSSSRADP LVNTFSFGPS TTPRLPQTGF LGHSRYNFLS STERNPAFSP RTPQNIASAQ 120 PIIRTPQSQR SSLARNKYTV GSQHVPFALP TQPKVTREPH SIDRTRPFLR QLERPFSSGG 180 NHGKRSYAET LDLTLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030483.1	4e-65	PREDICTED: uncharacterized protein LOC105129916
TrEMBL	B9HKH6	1e-130	B9HKH6_POPTR; Uncharacterized protein
STRING	POPTR_0008s16800.1	1e-130	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14890	8	12