PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008611.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 314aa    MW: 35266.9 Da    PI: 5.6402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008611.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+ +v+++G  +W++ ++  g+ R++k+c++rw +yl
      CCG008611.1 14 RGPWTPEEDQILISYVQKYGHSNWRALPKQAGLQRCGKSCRLRWVNYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.21.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
      CCG008611.1  67 RGNFSKEEEETIIKLHEVLGNR-WSAIASRLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-27564IPR009057Homeodomain-like
PROSITE profilePS5129417.651961IPR017930Myb domain
SuperFamilySSF466894.31E-3210108IPR009057Homeodomain-like
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002493.4E-171461IPR001005SANT/Myb domain
CDDcd001674.06E-121661No hitNo description
PROSITE profilePS5129424.46762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2565117IPR009057Homeodomain-like
SMARTSM007172.9E-1466114IPR001005SANT/Myb domain
PfamPF002493.7E-1567112IPR001005SANT/Myb domain
CDDcd001671.92E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVRAPCCEKM GLKRGPWTPE EDQILISYVQ KYGHSNWRAL PKQAGLQRCG KSCRLRWVNY  60
LRPDIKRGNF SKEEEETIIK LHEVLGNRWS AIASRLPGRT DNEIKNVWHT HLLKRLKQNG  120
ESKSQQHIRI PDCHLNDNKL SQSANSTVPF LSGCKSIEDA QMSPQPSSSD HSSITDTSET  180
NNTGLIKVEN IDSSEIYPVI DEDFWSEPEM VENSGMPSSS FLDDSQFPFP SPDTVEPAGC  240
NGYGPKVDDN MGFWYNLFIK SGGIEELPVQ YLQSGELGTA TIKVDMLPCT CWHPIVAVVE  300
ASLIKMIVLE KVAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029827.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLB9HKG60.0B9HKG6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-77myb domain protein 14