PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008667.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 191aa MW: 21832.5 Da PI: 9.2855

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008667.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.6e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W++ ++ g+ R++k+c++rw++yl CCG008667.1 13 KGAWSQQEDQKLIDYIQKHGEGCWRSLPQAAGLLRCGKSCRLRWRNYL 60 79****************************99***********7 PP
2	Myb_DNA-binding	48.9	1.5e-15	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ CCG008667.1 68 GFGEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 5789**************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.7E-24	4	62	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.686	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-28	11	107	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-14	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-17	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	6.22E-11	15	60	No hit	No description
PROSITE profile	PS51294	23.244	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-24	63	115	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-14	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-14	69	110	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-10	71	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MRKPCCDKQH TNKGAWSQQE DQKLIDYIQK HGEGCWRSLP QAAGLLRCGK SCRLRWRNYL 60 RPDLKRDGFG EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IKKKLESSHR 120 NIGFTRLRAE ISSAARSKSQ ANDPETFLDV NNQVFDSNSG KPEPSNKVSS DINLDLTLSI 180 PSKKLESSDE N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-29	13	117	7	110	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000470.1	1e-140	PREDICTED: myb-related protein 308-like
Refseq	XP_011000471.1	1e-140	PREDICTED: myb-related protein 308-like
Refseq	XP_011012518.1	1e-140	PREDICTED: myb-related protein 308-like
Refseq	XP_011012519.1	1e-140	PREDICTED: myb-related protein 308-like
Swissprot	P81393	1e-69	MYB08_ANTMA; Myb-related protein 308
TrEMBL	B9IEA0	1e-126	B9IEA0_POPTR; Uncharacterized protein
STRING	POPTR_0015s04300.1	1e-126	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	4e-70	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]