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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG008671.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | MYB | ||||||||
| Protein Properties | Length: 1220aa MW: 136261 Da PI: 7.3483 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27.2 | 9.1e-09 | 429 | 472 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+WT Ed+ l+ v++ G +W Ia +g++Rt+ qc sr+q
CCG008671.1 429 PWTIKEDKNLLLIVQEKGVTNWFDIAVSLGTNRTPSQCLSRFQR 472
8*****************************************96 PP
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| 2 | Myb_DNA-binding | 40.1 | 8.7e-13 | 481 | 526 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
WT+eEd +l av+ +G ++W ++a+t+ gR + qc +rw k l
CCG008671.1 481 REWTKEEDAQLRIAVETYGERDWQSVASTLE-GRAGTQCSNRWKKTL 526
68*****************************.***********9975 PP
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| 3 | Myb_DNA-binding | 53.1 | 7.2e-17 | 534 | 578 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
grWT +Ed++l+ avk++G++ W++Ia+ ++ gRt qc++rw +
CCG008671.1 534 GRWTLDEDKRLKVAVKLFGPKKWDKIAQFVP-GRTQVQCRERWVNC 578
8******************************.***********986 PP
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| 4 | Myb_DNA-binding | 44.3 | 4e-14 | 587 | 628 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
WT+eEd++l+ a+++ G W+++a++++ Rt++qc rw
CCG008671.1 587 EWTEEEDLRLKAAIEECGYC-WSKVAERLP-QRTDNQCLRRWKV 628
7*****************99.*********.***********86 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50090 | 5.889 | 322 | 421 | IPR017877 | Myb-like domain |
| SMART | SM00717 | 0.24 | 326 | 423 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 329 | 345 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 394 | 434 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.26E-15 | 402 | 471 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 9.295 | 422 | 474 | IPR017930 | Myb domain |
| SMART | SM00717 | 4.2E-7 | 426 | 476 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 6.44E-6 | 429 | 474 | No hit | No description |
| Pfam | PF13921 | 3.8E-11 | 430 | 491 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 5.4E-13 | 435 | 482 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.38E-18 | 459 | 532 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 16.381 | 475 | 526 | IPR017930 | Myb domain |
| SMART | SM00717 | 7.9E-11 | 479 | 528 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 9.66E-10 | 482 | 526 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 8.5E-17 | 483 | 532 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 23.226 | 527 | 583 | IPR017930 | Myb domain |
| SMART | SM00717 | 5.3E-15 | 532 | 581 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 1.49E-26 | 533 | 626 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 534 | 584 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 2.3E-15 | 534 | 578 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 4.01E-13 | 535 | 577 | No hit | No description |
| PROSITE profile | PS51294 | 19.668 | 584 | 634 | IPR017930 | Myb domain |
| SMART | SM00717 | 2.6E-12 | 584 | 632 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 9.7E-18 | 585 | 629 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 1.4E-12 | 587 | 628 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 3.55E-11 | 587 | 630 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1220 aa Download sequence Send to blast |
MSRFRRPNDE EEEEEEDDDD DDDFQNDMEA LRQACLLTGT NLTNISPSAA VPDRSGEADG 60 NSCGGASVSD SGSEDDFELF RSVQNRFAIS AGSLEPLSLK PLYALPAVSD DEEDDFETLC 120 AVKRRFAAYD NNNSQEKLKT EMEKPEVGVS DNSLVERNTA CEVLPVTEQD DNAANLLGDN 180 VEIGNSASAE ENELDGGRLS TLELDYSSFP KSAQVFIDAI KRNRSCQKFI QNKLIQIEAR 240 IEENNKLKDK VKILKDFQFS CRKITGMALS LRKDPRIQLV SARKTSDSKH PKVNGKKVSP 300 LQDGPVENSH VANYRTALTN FPLSLNRKKW TETEKENLGK GIRQQFQEMM LQFSMDQFSS 360 SEGSREDGTN LDSILVSIRD LEITPEKMRE FLPRVNWDQL ASSYVAGRSG AECEARWLNF 420 EDPLINQSPW TIKEDKNLLL IVQEKGVTNW FDIAVSLGTN RTPSQCLSRF QRSLNARILK 480 REWTKEEDAQ LRIAVETYGE RDWQSVASTL EGRAGTQCSN RWKKTLHPAI RRVGRWTLDE 540 DKRLKVAVKL FGPKKWDKIA QFVPGRTQVQ CRERWVNCLD PSMNRHEWTE EEDLRLKAAI 600 EECGYCWSKV AERLPQRTDN QCLRRWKVLV PHEVPLLQAA RRMQKAALIS NFVDRESERP 660 ALGPNDFVPL AITGLVSEPE KMDQSGKRKR KLRREESQME KVAAPGNALK KIKSNRSRKK 720 VQISSKEVPE IPDGTLVGNL GGSRSVVTET TMEYCSENNC HAERGQDHPS SNSILTPLMT 780 TSFQGVDSIQ NQRHPESHPK GHKPVDRVGN GKSLLMSPPE NLDAGMINGD VSQTFPLNGT 840 TSSKKRRAHK QHCRKNICAK SSEGSSVLSE TTIDASALVN DYLDSNLVTP NEEDNILGQC 900 DAPGKKRVPK LHSESSEWTG SLDSLLPPHE NSELRVASTE ILNNSSLFGI PTNEKRKAFK 960 LPCRRKIRNE EPSRKDQCFA AVPLQEDTTK KSKARGKLCS KKVLETKNED DFVLASLLRD 1020 KSKKKRLKVA QNADQACSSS SMITRPEVLS RVDQPSNGNK LSSVVHNSEG QTCSDGRSSE 1080 NGLSLDMNAH RSNHMLTERC ELDVNNHGIF APMEGVREPG RIDQEAVLEP GDISPAGSGS 1140 GVNTHSHARK GPQLHSKGGW AEQPRNDTDP DKLSCSVKNS IGSSSKPTII GNDIEPGGRS 1200 GHSPSASGEA LKYYKRRSKR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1h88_C | 3e-31 | 399 | 626 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 3e-31 | 399 | 626 | 4 | 155 | MYB PROTO-ONCOGENE PROTEIN |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 687 | 694 | RKRKLRRE |
| 2 | 1210 | 1216 | LKYYKRR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011000476.1 | 0.0 | PREDICTED: uncharacterized protein LOC105108037 isoform X1 | ||||
| TrEMBL | A0A3N7HT61 | 0.0 | A0A3N7HT61_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0015s04260.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF7441 | 33 | 44 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18100.1 | 0.0 | myb domain protein 4r1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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