PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008761.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 462aa    MW: 50078.7 Da    PI: 7.0422
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008761.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20218267255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  CCG008761.1 218 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 267
                  7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-14218267IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22218276IPR016177DNA-binding domain
PROSITE profilePS5103225.712218275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-33218276IPR001471AP2/ERF domain
SMARTSM003806.3E-37218281IPR001471AP2/ERF domain
PRINTSPR003671.3E-11219230IPR001471AP2/ERF domain
CDDcd000181.13E-14226277No hitNo description
PRINTSPR003671.3E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MYILKVANQR GDPREYTRYP ATDNYDNQEE RSYTAPQIRS QLNQPVEQHV EVTQSPHMFM  60
GYSSSTGMSM VSELTHVVSG QRGSTSDWGS YAAGGLGGAT ITSTFGQAAP GSNTSTPASP  120
PLSAYSSTSG SGLWIGQKRG REEEAGAAAQ LMESLPRVYR GFNDFRSSQG DSSSSGATAT  180
EEVPASTIVI PTTTTPSTTA APSSETASLE ETGEQRRRYR GVRQRPWGKW AAEIRDPHKA  240
ARVWLGTFDT AEAAARAYDE AALRFRGNRA KLNFPENVRL LPAQTQNVTA SQVPISHSQL  300
SSHLQLQPIS SPRQQAQRPQ APAPALFQSQ ADIIRDYWEY SQLLQSSGDF HQQQQQQQQQ  360
QQHQQQQPSS LLQNMFYNPQ VASLQSSALT SLSSSTSVSS LAAISSGSSP STFSPSASSF  420
PLLFAGQQLG YFRPPQNQNQ ASGSDFPVPP WTDSSHNPSS SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22217278163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042884.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLB9GT850.0B9GT85_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.16e-16ERF family protein