PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008858.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 373aa    MW: 42036.6 Da    PI: 8.1105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008858.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-09110135127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+ C  f   GtC+ G++C+FaHg+
  CCG008858.2 110 FKTRVCAKFKT-GTCRNGENCNFAHGM 135
                  69*******99.*************95 PP
2zf-CCCH29.51.3e-09174197225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  k++lC+ f+ + +C+yGdrC+F H
  CCG008858.2 174 KMKLCKKFYNGEECPYGDRCNFLH 197
                  789*******66************ PP
3zf-CCCH42.31.3e-13259284126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC  +  tG+C++G++C+FaHg
  CCG008858.2 259 WKTKLCTKWEMTGQCPFGEKCHFAHG 284
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819955.49E-926101No hitNo description
Gene3DG3DSA:2.60.200.208.2E-63984IPR000253Forkhead-associated (FHA) domain
Gene3DG3DSA:4.10.1000.101.5E-14105142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-8107140IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6109135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253109136IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7110135IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-9174198IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7174197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-17253290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-10257289IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7258285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544258286IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10259284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSYPDSPVSF MASQASYQSG SDAVDVWPQF VMNNNEQFQQ QQQQQQQQQQ QQQQQQQQQQ  60
QQQQQQQQQQ HQPPYKRPRS SEDNSNQSMS SRVPPTNSLP VHKGTTNIFF KTRVCAKFKT  120
GTCRNGENCN FAHGMQDLRQ PPPNWKELVS VGVSNEEDRS TATNREDDLR IIHKMKLCKK  180
FYNGEECPYG DRCNFLHEDP ANFREDAGRF RESSAISIGT TGHLMGQGSG VFNAAEVNRP  240
ANTAVSDAPR SNLIKPVYWK TKLCTKWEMT GQCPFGEKCH FAHGLAELQV PGGRNEVEAG  300
NAGSTVTNSP TPVLPNNTSP SMTVNVPSLV EEKGTKCLLK WKGQKKINRI YADWLDDLSL  360
VHTSTNQYGT SHH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014451.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
SwissprotQ9LT811e-93C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3N7EY470.0A0A3N7EY47_POPTR; Uncharacterized protein
STRINGPOPTR_0009s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-93C3H family protein