PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008928.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 207aa MW: 22976.2 Da PI: 8.6113

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008928.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	97.2	5.3e-30	1	207	1	224
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87 md+d s + rn+gyyep+ s k n+glqlms +++e+ ++++ +++ ++ +++rd m++ +r +++ + ++k+l++l+ CCG008928.1 1 MDEDHSLDiRNWGYYEPT-SSKGNVGLQLMSpTMPEKPLLGSHSKTIVKSVEGGFHHRDigvsqsmfpMEY-MRGAWIGQ--------REKFLKMLPG 88 999999999******9.8899***945668876665555559999****666666666666.55566655........89***8 PP GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185 +++ + +vl++t+ + ++q+ +++ ++ + + e+ ++e+a +++ + +kkrq++k+ k+ akk k+ ++++k + +++ + CCG008928.1 89 NHN-------YAEVLPETSAARHVQM-----FQP-SYSA-NDET--LDQVEDAGVVENANGPEKKRQHPKTLKSFIAKKGKRGPQVPKPDGSPSA--Q 168 886.......78999***9999.....333.3332.3333..3455677777777888888999999999999999998888877766666..7 PP GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYk 224 r ++ kk+ ++ +ng+s+D+s +P+PvCsC +++qCY+ CCG008928.1 169 RGRSAKKTAEIMINGISMDISVFPIPVCSCICSPQQCYQ 207 9***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.8E-66	1	206	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.3E-42	1	207	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDEDHSLDIR NWGYYEPTSS KGNVGLQLMS PTMPEKPLLG SHSKTIVKSV EGGFHHRDIG 60 VSQSMFPMEY MRGAWIGQRE KFLKMLPGNH NYAEVLPETS AARHVQMFQP SYSANDETLD 120 QVEDAGVVEN ANGPEKKRQH PKTLKSFIAK KGKRGPQVPK PDGSPSAQRG RSAKKTAEIM 180 INGISMDISV FPIPVCSCIC SPQQCYQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024437708.1	1e-133	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2K1Y8K0	1e-127	A0A2K1Y8K0_POPTR; Uncharacterized protein
TrEMBL	A0A3N7GMY9	1e-128	A0A3N7GMY9_POPTR; Uncharacterized protein
STRING	POPTR_0012s03750.1	1e-104	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	6e-31	basic pentacysteine 2