 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CCG008929.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 284aa MW: 31551.3 Da PI: 9.581 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG008929.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 310.3 | 6.5e-95 | 1 | 284 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalp 96
md+d+s + rn+gyyep+ ++k nlglqlm+ +++e+ + + +++ k+ +++rd+ lq+ +++ +a +++++k+ ++ + ++
CCG008929.1 1 MDEDNSLNiRNWGYYEPT-TVKGNLGLQLMApTMPEKPFSGSRSAAIMTSMKGGFHHRDIGVLQHMFPMENMRDASIDKREKFHHVFPGNHD------ 91
99***************9.9**********74677998777666666999*********************999*************98775...... PP
GAGA_bind 97 vgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksi 194
+ v ++t+ ++++q+ ++++ + e+l ++e a ++ke kk+qr+k k kakk k+ ++++k + +++ ++ k+ kk++
CCG008929.1 92 -YDVVFPETSLANHMQM-----FQPPNS--ADDETL--DQVEGAGVVEKEDGPDKKKQRPKALKCLKAKKGKRAPQVPKPDGSPSA--QQGKSAKKNV 177
.66789***********.....333322..234433..4556777788888889999999*************9999987777776..679******* PP
GAGA_bind 195 dlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292
++ +ng+s+D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt iSv+PLP++ krrgaRiagrKmS gafkk+LekLa+eGyd+sn++DL++hWAkH
CCG008929.1 178 EIMINGISMDISLFPIPVCSCTGTPQQCYRWGCGGWQSACCTTCISVHPLPMNMKRRGARIAGRKMSLGAFKKVLEKLAGEGYDFSNAIDLRTHWAKH 275
************************************************************************************************** PP
GAGA_bind 293 Gtnkfvtir 301
Gtnkfvti+
CCG008929.1 276 GTNKFVTIK 284
********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MDEDNSLNIR NWGYYEPTTV KGNLGLQLMA PTMPEKPFSG SRSAAIMTSM KGGFHHRDIG 60
VLQHMFPMEN MRDASIDKRE KFHHVFPGNH DYDVVFPETS LANHMQMFQP PNSADDETLD 120
QVEGAGVVEK EDGPDKKKQR PKALKCLKAK KGKRAPQVPK PDGSPSAQQG KSAKKNVEIM 180
INGISMDISL FPIPVCSCTG TPQQCYRWGC GGWQSACCTT CISVHPLPMN MKRRGARIAG 240
RKMSLGAFKK VLEKLAGEGY DFSNAIDLRT HWAKHGTNKF VTIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982272 | 0.0 | FJ982272.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) gene, complete cds. |
| GenBank | FJ982273 | 0.0 | FJ982273.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) mRNA, complete cds. |
