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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
CCG008931.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 284aa MW: 31743.3 Da PI: 9.4451 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG008931.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 322.1 | 1.7e-98 | 1 | 284 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87
md+d+s + rn+gyyep+ s+k nlglql+s +++e+ +n+ +++ ++ +++rd m+ +rd ++ + ++kll++l+
CCG008931.1 1 MDEDNSLNiRNWGYYEPT-SVKGNLGLQLLSpTMPEKPFMGARSNAIMTNVSGGFHHRDigvsqpmfpMEC-MRDVWIGH--------REKLLNILPG 88
99***************9.***********84677999888888988************888888777777.78888877........789******8 PP
GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
+++ + l++t s++++q ++++ e + e+l ++ee+ ++ke+ +kkrqra+ pk++kakk ++ ++++k + +++ +
CCG008931.1 89 NHN-------YEALLPETASTHHVQV-----FQPPDSE--NDEML--DQVEESGFVEKENGPNKKRQRANAPKSPKAKKGTRAPRVPKPEGSPSV--Q 168
886.......77899*******9999.....4444444..33433..55678888999999999******************9999987777777..7 PP
GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
r+++ kk++++ +ng+++D s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt iS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGyd+snp+
CCG008931.1 169 RVRSAKKTTEILINGINMDMSVIPIPVCSCTGNPQQCYRWGCGGWQSACCTTCISMYPLPMSTKRRGARIAGRKMSSGAFKKVLEKLADEGYDFSNPI 266
9************************************************************************************************* PP
GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
DL++hWAkHGtnkfvtir
CCG008931.1 267 DLRTHWAKHGTNKFVTIR 284
*****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MDEDNSLNIR NWGYYEPTSV KGNLGLQLLS PTMPEKPFMG ARSNAIMTNV SGGFHHRDIG 60
VSQPMFPMEC MRDVWIGHRE KLLNILPGNH NYEALLPETA STHHVQVFQP PDSENDEMLD 120
QVEESGFVEK ENGPNKKRQR ANAPKSPKAK KGTRAPRVPK PEGSPSVQRV RSAKKTTEIL 180
INGINMDMSV IPIPVCSCTG NPQQCYRWGC GGWQSACCTT CISMYPLPMS TKRRGARIAG 240
RKMSSGAFKK VLEKLADEGY DFSNPIDLRT HWAKHGTNKF VTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982270 | 0.0 | FJ982270.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC10) gene, complete cds. |
| GenBank | FJ982271 | 0.0 | FJ982271.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC10) mRNA, complete cds. |
