PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009040.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27289 Da    PI: 10.3713
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009040.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.3e-221562249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i n+sn  vtfskRr g++KKA+E+S+LC+aeva+i+fs+  k++ +
  CCG009040.1 15 KIANESNLMVTFSKRRSGLFKKASEISTLCGAEVAIIVFSPGKKVFSF 62
                 589**************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-30665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.857666IPR002100Transcription factor, MADS-box
CDDcd002655.00E-34774No hitNo description
SuperFamilySSF554551.83E-26778IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-18828IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRSSKGRQK LEMVKIANES NLMVTFSKRR SGLFKKASEI STLCGAEVAI IVFSPGKKVF  60
SFGHPSVEKV VERYVSGNIP QTSGAFHLIE AHRNARIREL NMKLTQAQNQ LEMEKKRGEE  120
LDKLRKASQS QNWWESPIQE LDLAQLEQLK ASFLTLKQNL ARQAQQILLQ NSAPPQPFFS  180
PNPGTAGNLP FDTSNTGSNS NMAVAPFSSN TPMTAFNTNM TGTPFNQSST TMTPYGYNLG  240
YGNGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-17783177Myocyte-specific enhancer factor 2A
3kov_B5e-17783177Myocyte-specific enhancer factor 2A
3kov_I5e-17783177Myocyte-specific enhancer factor 2A
3kov_J5e-17783177Myocyte-specific enhancer factor 2A
3p57_A5e-17783177Myocyte-specific enhancer factor 2A
3p57_B5e-17783177Myocyte-specific enhancer factor 2A
3p57_C5e-17783177Myocyte-specific enhancer factor 2A
3p57_D5e-17783177Myocyte-specific enhancer factor 2A
3p57_I5e-17783177Myocyte-specific enhancer factor 2A
3p57_J5e-17783177Myocyte-specific enhancer factor 2A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014568.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2K1ZSV21e-170A0A2K1ZSV2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03430.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-62AGAMOUS-like 62