PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009048.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 322aa    MW: 36642.9 Da    PI: 6.056
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009048.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY733.8e-23131191259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK + ++++prsY+rC  +   gC+++k+v+r +++p++ +itY g+H+++
  CCG009048.1 131 EDSHAWRKYGQKGILNAKYPRSYFRCIRKyeqGCKATKQVQRMEDNPDMYHITYIGSHTCR 191
                  8*************************9877789**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-23119191IPR003657WRKY domain
PROSITE profilePS5081118.877125188IPR003657WRKY domain
SuperFamilySSF1182903.92E-22127191IPR003657WRKY domain
SMARTSM007743.0E-32130192IPR003657WRKY domain
PfamPF031068.2E-23131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGTCLPEKLS SSREKVIKEL VRGHEFATQL QIRLQKPCGN FDGRFSSPGE LVGKILRSFS  60
ETLSVITSSE SAGGEICQNL ASSLGDSACY DDRRSKDSGE SKKRPATKDR RGCYNRKKIS  120
QSWTTVCPTI EDSHAWRKYG QKGILNAKYP RSYFRCIRKY EQGCKATKQV QRMEDNPDMY  180
HITYIGSHTC RNIPEAPQII TDSDPWESYN LTNSGSSHSK IPRYEEQDHH PIMGSSCKVE  240
QESKEDQTPT NLADNVSSLD SFMWKDLIPF QEPVDEPTMI LRSDYEAVDS IHLFSCTEVT  300
SQSLDMDFVV KSFDFDCDFH FD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-22124191269OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014496.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A2K1Y3950.0A0A2K1Y395_POPTR; Uncharacterized protein
STRINGPOPTR_0013s09470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-51WRKY DNA-binding protein 70