PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009093.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 280aa    MW: 30628.4 Da    PI: 8.9989
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009093.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G+g Wk I r          R+  ++k++w++ 
      CCG009093.1  5 KQKWTSEEEEALRAGVAKHGTGKWKNIQRDPEfnpylFSRSNIDLKDKWRNM 56
                     79*******************************9**989**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.608161IPR017930Myb domain
SuperFamilySSF466892.58E-16259IPR009057Homeodomain-like
SMARTSM007171.9E-8459IPR001005SANT/Myb domain
PfamPF002495.2E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-14556IPR009057Homeodomain-like
CDDcd116609.55E-21657No hitNo description
SuperFamilySSF467851.31E-16115198IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.8E-16115192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005268.7E-20116181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.758118186IPR005818Linker histone H1/H5, domain H15
PfamPF005382.4E-11120179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQRDPEFNPY LFSRSNIDLK DKWRNMTVSA  60
GSQSVKDKSR TLKAKSNPDA AAAVVAASTP LSNPHTSAVA AVDVVIDDSS EAAADSKTAP  120
KYNAMIFEAI SALNEPNGAD TSAIISYIER RQELPQNFRR QLSSRLRRLV AQEKLEKVHN  180
CYKIKKASSF GTKTPTPKQK EVRPKPEQNT GLTNSGDTIA EAADDAAYMV VEAENKSFVA  240
TEAVKESERV SKMAEDANSL LQLASEILEK CSRGEIVVMG
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045603.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4IEY43e-74TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLB9N5F40.0B9N5F4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.26e-68MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]