PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009191.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 194aa MW: 20839.6 Da PI: 8.7245

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009191.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135	2.8e-42	18	118	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++p+++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++++ CCG009191.1 18 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPQNQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLEAELNAVR 115 7***********************************************************************************************99 PP DUF260 99 eel 101 +e+ CCG009191.1 116 NEI 118 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.671	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-42	18	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MGRRHMLGPP GTLNTITPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HKVFGASNVS 60 KMLMEVPQNQ RADAANSLVY EANVRLRDPV YGCMGAISAL QQQVQSLEAE LNAVRNEILK 120 YRYREANIIH SSHVALLSSG AVSIAAPSPA PSTPPPPTAS PPPSSSSSLM YTQPTSSAAA 180 DYSTTSTENV SFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-46	10	129	3	122	LOB family transfactor Ramosa2.1
5ly0_B	3e-46	10	129	3	122	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010866.1	1e-141	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_011014548.1	1e-141	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	8e-75	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2K1Y2W3	1e-139	A0A2K1Y2W3_POPTR; Uncharacterized protein
STRING	POPTR_0013s08040.1	1e-140	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-73	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]