PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009220.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 207aa    MW: 22392.6 Da    PI: 8.3079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009220.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18117166255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp   g+  r +lg+f+ ae+Aa+a+++   +++g
  CCG009220.1 117 KYRGVRQRP-WGKWAAEIRDP---GQGSRLWLGTFDNAEDAARAYDKKNIEFRG 166
                  8********.**********8...435*******************98777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.63117174IPR001471AP2/ERF domain
SMARTSM003807.2E-36117180IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-22117175IPR016177DNA-binding domain
CDDcd000181.56E-31117174No hitNo description
PfamPF008471.1E-11117165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-31117175IPR001471AP2/ERF domain
PRINTSPR003672.2E-11118129IPR001471AP2/ERF domain
PRINTSPR003672.2E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDASSSNNLV QRRVDEHNAI VSALKHVISG GIDHGSTTGP IEYQNQQQIL AADDGNVGGG  60
SSIIYVSDSE TCPVCKLSTS QCLGCVYFSS GTTDQEGGGG NEGTTKKTGK GKGRKNKYRG  120
VRQRPWGKWA AEIRDPGQGS RLWLGTFDNA EDAARAYDKK NIEFRGIRAI TNFPRSDYQV  180
REMEQDKPNK TGKAKNDVGE TSQVGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22118174360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164690.0AC216469.1 Populus trichocarpa clone POP036-C22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043562.11e-153PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLB9HHG61e-128B9HHG6_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11080.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-24ERF domain protein 11