PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009247.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 286aa    MW: 30907.9 Da    PI: 4.631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009247.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-1865115155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  CCG009247.1  65 PVFRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFATPEMAARAHDVAAMSIKG 115
                  579****998.**********854...59*********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-1265115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-3166124IPR001471AP2/ERF domain
PROSITE profilePS5103222.28666123IPR001471AP2/ERF domain
SMARTSM003809.7E-3566129IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2066124IPR016177DNA-binding domain
CDDcd000187.10E-3067125No hitNo description
PRINTSPR003672.4E-96778IPR001471AP2/ERF domain
PRINTSPR003672.4E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTVLPVSNSS SETDSTSTYS SSLQALSSPS SSGLSPNPVS KPDPEENPRK PKRPRESTSS  60
SSKHPVFRGV RMRTWGKWVS EIREPRKKNR IWLGTFATPE MAARAHDVAA MSIKGNSAIL  120
NFPELAGSLP RPTSNSPRDV QAAAAKAASM DVNIVPSAPN KICDDENNSK SNDSTASNNN  180
RSSSSLVTQS TSSSSTAEVT SSPSDVATPE ELSEIVELPS LEANLEEFPE FVLFGDSWPY  240
NINQSWYCEG YGAEGTGYFS DQYLSIIPES NVITTTGAFE TSLWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1861124973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514620.0EF151462.1 Populus trichocarpa TINY-like protein 2 (TINYL2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048337.10.0PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0803e-50ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLB9ILS41e-148B9ILS4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s09270.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]