PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009372.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 273aa    MW: 30606.5 Da    PI: 7.9044
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009372.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161164148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     rg WT+ Ed++l+ +v+ +G g+W++++++ g      ++R++k+c++rw++yl
      CCG009372.1 11 RGTWTATEDKILAAYVRNYGEGNWARVPKETGklnftsLKRCGKSCRLRWLNYL 64
                     89**************************************************97 PP
2Myb_DNA-binding513.3e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
      CCG009372.1  70 RGNISPDEEDLIIRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNST 114
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.914664IPR017930Myb domain
SuperFamilySSF466898.03E-289111IPR009057Homeodomain-like
SMARTSM007171.2E-121066IPR001005SANT/Myb domain
PfamPF002491.7E-151164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-211271IPR009057Homeodomain-like
CDDcd001676.86E-101364No hitNo description
PROSITE profilePS5129425.85665119IPR017930Myb domain
SMARTSM007173.2E-1669117IPR001005SANT/Myb domain
PfamPF002491.2E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2572119IPR009057Homeodomain-like
CDDcd001671.14E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRSPKGGII RGTWTATEDK ILAAYVRNYG EGNWARVPKE TGKLNFTSLK RCGKSCRLRW  60
LNYLKPDVKR GNISPDEEDL IIRLHKLLGN RWALIAGRLP GRTDNEIKNY WNSTLKRKVQ  120
ANDQKQPRRG NKDTKKQTRK TSTGLSKAAP STNSSLPSPP VLAENKETDQ ILTASSIEEG  180
TLEKYLIENP NSNDELLLFT NDNDVPCNFL MDLDMGQMSF SDFLQTDIFS DGNNMLVNGP  240
APSYPDEASS FPEAMLKNWT CEDGFELDLA MGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2891195108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5885480.0FJ588548.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB183) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019359.10.0PREDICTED: transcription factor WER-like
TrEMBLB9HD140.0B9HD14_POPTR; MYB family protein
STRINGPOPTR_0006s23810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-52MYB family protein