PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009374.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 296aa MW: 33237.6 Da PI: 7.9761

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009374.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l ++k +G g W+ +++ g++R++k+c++rw++yl CCG009374.1 14 RGAWTALEDKILMAYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.2	6e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++ CCG009374.1 67 RGNISNDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78899***************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.004	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.6E-27	12	108	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	7.05E-9	16	61	No hit	No description
PROSITE profile	PS51294	24.482	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-23	65	115	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.35E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILMAYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SNDEEDLIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKANAQA 120 SPQSKQNSQS FKKRAIEPMS NTQSSKSTLP THVIPTKATR CTKVFLSLQS PPPPIPPPKA 180 LSSTAIDDPP QAPLLNHQQA IPTLHCGTEE LHACDDDSDF LNFGHWNEFQ PSDGGTLIDN 240 DCDKNVSIGS YHSFALSDDL MFKDWALTRC LDDNSTLDLE SLAHLLDSEE WPEMRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ573151	0.0	FJ573151.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB134) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019362.1	0.0	PREDICTED: myb-related protein 308-like
TrEMBL	C5HYE6	0.0	C5HYE6_POPTM; MYB transcription factor R2R3-like protein
STRING	POPTR_0006s23840.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-62	myb domain protein 5