PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009392.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 165aa    MW: 18767.7 Da    PI: 5.4015
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009392.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.5e-31104162159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver+++dp++v++tYeg H+h+
  CCG009392.1 104 LDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDRDDPRYVITTYEGIHTHQ 162
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-3490163IPR003657WRKY domain
SuperFamilySSF1182906.8E-2997163IPR003657WRKY domain
PROSITE profilePS5081130.7199164IPR003657WRKY domain
SMARTSM007744.3E-37104163IPR003657WRKY domain
PfamPF031064.0E-25105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSSPKLSTQQ DTPELSDYAH DQLSNFELSE FLTFDEWIPL EDAPSSIASS YACNPVYRAR  60
VVGESGGSSS PREELSGGEG EEGREKKEAK ERVAFKTKSE IEILDDGYKW RKYGKKMVKN  120
SPNPRNYYRC SVEGCPVKKR VERDRDDPRY VITTYEGIHT HQSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2594161774Probable WRKY transcription factor 4
2lex_A2e-2594161774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019388.11e-120PREDICTED: probable WRKY transcription factor 50
SwissprotQ8VWQ56e-45WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLB9HDB01e-100B9HDB0_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24050.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-42WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]