PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009438.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 234aa    MW: 25790.1 Da    PI: 10.243
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009438.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19101134134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  CCG009438.1 101 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 134
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-1395135No hitNo description
SMARTSM004018.6E-2095146IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.84895131IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-1699134IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.08E-13100132No hitNo description
PROSITE patternPS003440101126IPR000679Zinc finger, GATA-type
PfamPF003206.1E-17101134IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MYNISHGGSS SSFQPEVNDH NYNSNFRNLS SSKMEDGAEE SGESSVKWMP SKMRLMQKMT  60
NSNCSETDHK PMKFMLKFHN QQYQNNEINS SSNSNSNIRV CSDCNTTSTP LWRSGPRGPK  120
SLCNACGIRQ RKARRAMAAA AAAANGTVIA IEASSSTRSS KVNNKVKKSR TSHVSQNKKL  180
SKPPESSLQS QKKLCFKNLA LSLSKNPALQ QVLPHDVEEA AILLMELSCG FIHS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1476140.0EF147614.1 Populus trichocarpa clone WS0123_N07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019465.11e-172PREDICTED: putative GATA transcription factor 22
TrEMBLA9PGX11e-168A9PGX1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24560.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-20cytokinin-responsive gata factor 1