PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009508.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 373aa    MW: 41258.4 Da    PI: 6.3197
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009508.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17262296135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  CCG009508.1 262 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 296
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-7621352IPR016679Transcription factor, GATA, plant
SMARTSM004014.6E-17256306IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.149256292IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14257293IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.57E-15258320No hitNo description
CDDcd002027.49E-14261308No hitNo description
PfamPF003201.4E-15262296IPR000679Zinc finger, GATA-type
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEAPELYGTT GFCSSQFTSN EKHHSLDSNK PIGGGDHFIV EDLLDFSNED EDAMVTDPSN  60
NNIVTPTTNS TDSSTVTFVD SCNSSSFSGC EPSGFNGDIG SHYTNNFSHH DVHLGSELCV  120
PYDDLAELEW LSNFVEESFS SEDLQRLQLI SGMKARPDES SETRQFQTDD NNNGNVSNIC  180
NNNTMFNPEM AVPAKARSKR SRAAPGNWAS RLLVLSPTTS SSEPEIIPGS TQHPNSGKKT  240
IKGAVGLKKR DGDVEGGDGR KCLHCATDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY  300
RPAASPTFML TKHSNSHRKV LELRRQKEMV RAQQQHQHQQ YLHHHQNMVF DVSNGGGDYL  360
IHQHVGPDFR QMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019597.10.0PREDICTED: GATA transcription factor 12
SwissprotP697813e-94GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2I4KKR00.0A0A2I4KKR0_POPTR; GATA transcription factor
STRINGPOPTR_0006s25410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-83GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]