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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG009545.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | MYB | ||||||||
| Protein Properties | Length: 1028aa MW: 112867 Da PI: 4.797 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 58.1 | 2e-18 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l
CCG009545.2 39 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
799****************************9.************986 PP
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| 2 | Myb_DNA-binding | 63.3 | 4.7e-20 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEde+++++v++ G++ W+tIa++++ gR +kqc++rw+++l
CCG009545.2 91 KGPWSKEEDEIIIELVNKCGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137
79******************************.*************97 PP
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| 3 | Myb_DNA-binding | 46.5 | 8.6e-15 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+
CCG009545.2 143 KEAWTQQEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 185
579*******************.*********.***********8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 17.705 | 34 | 85 | IPR017930 | Myb domain |
| SMART | SM00717 | 2.2E-15 | 38 | 87 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 8.7E-16 | 39 | 85 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 40 | 94 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.0E-15 | 40 | 95 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 3.57E-14 | 42 | 85 | No hit | No description |
| PROSITE profile | PS51294 | 33.176 | 86 | 141 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 5.24E-31 | 88 | 184 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 4.9E-19 | 90 | 139 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.4E-18 | 91 | 137 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 1.22E-16 | 93 | 137 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 7.3E-27 | 95 | 140 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 141 | 192 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 18.727 | 142 | 192 | IPR017930 | Myb domain |
| SMART | SM00717 | 8.6E-15 | 142 | 190 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 6.3E-13 | 143 | 186 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.54E-11 | 145 | 185 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1028 aa Download sequence Send to blast |
MESSDSLISA PVDGLVSEGV PRPKLLHGRT SGPARRSTKG QWTAEEDEIL RKAVQRFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE IIIELVNKCG PKKWSTIAQH 120 LPGRIGKQCR ERWHNHLNPS INKEAWTQQE ELALIRAHQI YGNRWAELTK FLPGRTDNAI 180 KNHWNSSVKK KLDSYLASGL LEQFQAFPLV GHQTLPMSSS SSRLHCSGDD NAQRGGAEAE 240 DISECSQEST IVGCSQSASD LGNAVFHTRE EFQLAEESGL RKEQSSSPAS CSEQYYIPEM 300 RCELGGSSNF LQQNFSHNTL TSVSSDYQFE FQELPNVSSL ELRQESSGLP THCITANESH 360 ELVNVPFQTS IGLSAPASMG NITTSSVQSD QIFISDDECC RILFSEAANG GIFSSENITK 420 DSSVVDLGDG MDSSLPQSSS TQISETERRA SQSYCPPRSA VLGASCSQSF LSGPSLYSAD 480 NSTPLVYDRE PDELMVQSFG THEQQFITSV HDSFIYTNDA INSSCDDGTC NTELQEQPYL 540 KELSKLVPVN AFPSGSDTIS SCPADEQPNV HAGGLCYEPP RFPCLDIPFL SCDLIQSGSD 600 MQQEYSPLGI RQLMMSSSMN CITPFRLWDS PSRDGSPDAV LKSAAKTFTG TPSILKKRNR 660 DLLSPLSERR GDKKLEIDMA SNLSKDFSRL DVMFDESETR NRSSLLSPSS DQEKNHESSG 720 ENKENLDPAR EGAEENIGNS EDNVKQGVGD SDARSKAHPD AAAQNVKQSS EVPIEENSDY 780 LVFSPHQLGF KADRTFGPSA RTPGNFHRKI LSTLSEQASA SESSSGNPCI IISPTVCMEK 840 NHGSHIVEST SAQPIPSSAP SENMPDNSGN SAGTENFGIF GDTPFKRSFE SPSAWKSPWF 900 INSFVPGSRI DTEISIEDMG YFMSPGDRSY DAIALMKQLS EHNAPAFADA LEVMGKDTPE 960 SILKERRRSN DADGDIENCS HLVSNVSTEC RTLDFSECGT PGKKTENGKS STAISFSSPS 1020 SYLLKSCR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1h88_C | 6e-70 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 6e-70 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011019647.1 | 0.0 | PREDICTED: myb-related protein 3R-1 | ||||
| TrEMBL | A0A3N7GN88 | 0.0 | A0A3N7GN88_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0006s25840.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3727 | 33 | 62 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G32730.2 | 0.0 | Homeodomain-like protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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