PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009636.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 753aa    MW: 86659.2 Da    PI: 6.8933
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009636.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.81.2e-3079170291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++  HnHel+p
  CCG009636.1  79 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRVITRVGCKASLSVKMQDSGKWVVSGFVRGHNHELVP 170
                  9***************************************998888545677889***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-2979170IPR004330FAR1 DNA binding domain
PfamPF105515.5E-33291383IPR018289MULE transposase domain
PfamPF044347.7E-12559605IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.325571607IPR007527Zinc finger, SWIM-type
SMARTSM005759.8E-9582609IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MENEVLEFDI GLGSGADDDA VDIDIDDDLP STPPLPLPLP LPSSTSTPPT QIYLPEGDLL  60
DLEPYESMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL  120
NEKRTKDREI KRPRVITRVG CKASLSVKMQ DSGKWVVSGF VRGHNHELVP LDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYIR NNRQKSMEGD  240
IQLLLDYLRQ MHNENPNFFY ALQGGDDQFT GNVFWSDPRA RANYSYFGDT VTFDTTYRSN  300
RYRLPFAPLT GVNHHGQPVL FGCAFLLNET EASFIWLFQT WLTAMSGHHP VSITTDHDAV  360
ISSAIMQVFP ETRHRFCKWH IFKKSQEKLS HVLLKHPSFE ADFHKCVNLT ESIEEFESCW  420
LSLVDRYELR YHEWLQMIFS DRRQWVPVYL RDAFFAEMSI TQRSDSINSY FDGYVNASTN  480
LSHFFKLYEK AIESRNEKEV KADYDTMNTN PVLKTPSPME KQASGHYTRK LFARFQEELV  540
GTLTFMASKA EDDGESIMYQ VAKFGEDHKA YYVKFNVLEM KARCSCQMFE FSGLLCRHVL  600
AVLRVTNVLT LPSHYILKRW TRNAKSNVIL EEHPTDVYNG YLESHTVRYN TLRHEAFKFV  660
DEGSKSLDTY NVAMVALQEA TTRVALATKN EGRTSVKDMD KKIQELRDDL EQANRKCEVY  720
RANLLSVLKD TEDHKLQLSI QVESIKISMK DSI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000845.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1Z9610.0A0A2K1Z961_POPTR; Uncharacterized protein
STRINGPOPTR_0009s17110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]