PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009721.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 232aa MW: 26480.8 Da PI: 9.9908

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009721.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	37.9	3.6e-12	137	159	1	23
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK vk+++fprs CCG009721.1 137 LDDGYRWRKYGQKAVKNNKFPRS 159 59********************8 PP
2	WRKY	55	1.6e-17	171	210	20	59
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt++gC vkk+v+r ++d+ vv++tYeg H+h+ CCG009721.1 171 LFRSYYRCTYQGCDVKKQVQRLTKDEGVVVTTYEGMHTHP 210 56*************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-31	122	210	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-24	129	211	IPR003657	WRKY domain
PROSITE profile	PS50811	24.34	132	212	IPR003657	WRKY domain
SMART	SM00774	5.8E-36	137	211	IPR003657	WRKY domain
Pfam	PF03106	5.8E-8	138	159	IPR003657	WRKY domain
Pfam	PF03106	2.1E-13	172	210	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEANTFTTRD IEALSWKLRE ASDADMHHSS ILLPPNRSLK KVITRSPNYP VSSSMTNSSH 60 VFHNFQADSS GGFLGLKTET QHPVPRISPE INKDLNSQSV SFAIGSETEP QAAKKKGEKK 120 IRKPKYAFQT RSQVDILDDG YRWRKYGQKA VKNNKFPRSN RGVAATNDAY LFRSYYRCTY 180 QGCDVKKQVQ RLTKDEGVVV TTYEGMHTHP IEKPNDNFEH ILSQMQIYST PF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-23	127	211	7	76	Probable WRKY transcription factor 4
2lex_A	4e-23	127	211	7	76	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011000970.1	1e-115	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A3N7EKI2	1e-111	A0A3N7EKI2_POPTR; Uncharacterized protein
STRING	POPTR_0001s33560.1	1e-112	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	9e-53	WRKY DNA-binding protein 75