PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009821.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 899aa MW: 99253.6 Da PI: 6.8479

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009821.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.2e-17	29	72	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT+eE++++++a k++G g W++I +++g ++t+ q++s+ qk CCG009821.1 29 REKWTEEEHQRFLEALKLYGRG-WRKIQEHVG-TKTAVQIRSHAQK 72 789*****************.*****.*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.04E-15	23	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.49	24	78	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.2E-15	27	76	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-13	28	76	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-15	29	72	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-9	29	71	IPR009057	Homeodomain-like
CDD	cd00167	2.72E-11	31	74	No hit	No description
SuperFamily	SSF64182	6.17E-11	575	890	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MVLQLNELHS FGSDNIPKVR KPYTITKQRE KWTEEEHQRF LEALKLYGRG WRKIQEHVGT 60 KTAVQIRSHA QKIFSKVVWE SSGGNESSLK PIEIPPPRPK RKPAHPYPRK SVDIHKGTPA 120 SSQLDGSPSP NSSASEKDNL SPTSVLSAVA SDTLGTALSE QHNACSSPTS CTTDMQPSAK 180 EAEHLTSKSS REEDKETFSL IQMSCSPLEK FLSKKFELGS DDTVSAEGDA TKEASSTSIK 240 LFGMTVMVAA SQKKSPPGAE LVLSMTSNEN QDNVDTDKEK PAQTLLLKQS DNELSLGMEN 300 SDQNQLPSPA SVFECTELQR GTANYFATNP SIPCWFFGNG VSVLPPTSYD HTSPPTPTPT 360 PTPSYIPTSY DHTSPPAATP SYMAERSEEK EILNERSCTG SNAGSVGELE NVEKSLDVVD 420 SQCRQPSVEG KPSLQKCTRG FVPYKRCLGE RDVKSTVIVY EERERQRARL NPVQSKMSHA 480 EDGLRTICQK DISPRKPKKV KTRDQGLLKN GVSINRRLAR GSDHVDNKEG NKLQAVQGNV 540 FGSLKIQENH LETFLKVAAA IMASLSVANN NSIKKSAAVL YHYPCPDGAF AALAAHLYFK 600 ATSLPASFFP NTVYSPIKPD QLPLHQFSHV YLLDFMGPSG FVQQLSSKVP RVVILDHHKT 660 AMEALGGRSF EAENVSKVID MERSGATIAF DYFKHKLLES GKNNYDEIIA EFDRVRRVFE 720 YIEDGDLWRW RLEDSKAFSS GLKDLNLEFN AQLNPFLFDQ LLSLNLESVI SQGMVSLSVK 780 QKLIDDTLDQ SYEIALGGGA FGHCLAVNAD SVSELRSELG HQLATKSRNL KLRGIGAIVY 840 RVRELENDEM LKISLRSVDS EDTTPISEEF GGGGHRNASS FMISSADFEQ WKVGKSASF

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MVLQLNELHS FGSDNIPKVR KPYTITKQRE KWTEEEHQRF LEALKLYGRG WRKIQEHVGT  60
KTAVQIRSHA QKIFSKVVWE SSGGNESSLK PIEIPPPRPK RKPAHPYPRK SVDIHKGTPA  120
SSQLDGSPSP NSSASEKDNL SPTSVLSAVA SDTLGTALSE QHNACSSPTS CTTDMQPSAK  180
EAEHLTSKSS REEDKETFSL IQMSCSPLEK FLSKKFELGS DDTVSAEGDA TKEASSTSIK  240
LFGMTVMVAA SQKKSPPGAE LVLSMTSNEN QDNVDTDKEK PAQTLLLKQS DNELSLGMEN  300
SDQNQLPSPA SVFECTELQR GTANYFATNP SIPCWFFGNG VSVLPPTSYD HTSPPTPTPT  360
PTPSYIPTSY DHTSPPAATP SYMAERSEEK EILNERSCTG SNAGSVGELE NVEKSLDVVD  420
SQCRQPSVEG KPSLQKCTRG FVPYKRCLGE RDVKSTVIVY EERERQRARL NPVQSKMSHA  480
EDGLRTICQK DISPRKPKKV KTRDQGLLKN GVSINRRLAR GSDHVDNKEG NKLQAVQGNV  540
FGSLKIQENH LETFLKVAAA IMASLSVANN NSIKKSAAVL YHYPCPDGAF AALAAHLYFK  600
ATSLPASFFP NTVYSPIKPD QLPLHQFSHV YLLDFMGPSG FVQQLSSKVP RVVILDHHKT  660
AMEALGGRSF EAENVSKVID MERSGATIAF DYFKHKLLES GKNNYDEIIA EFDRVRRVFE  720
YIEDGDLWRW RLEDSKAFSS GLKDLNLEFN AQLNPFLFDQ LLSLNLESVI SQGMVSLSVK  780
QKLIDDTLDQ SYEIALGGGA FGHCLAVNAD SVSELRSELG HQLATKSRNL KLRGIGAIVY  840
RVRELENDEM LKISLRSVDS EDTTPISEEF GGGGHRNASS FMISSADFEQ WKVGKSASF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047787.1	0.0	PREDICTED: protein REVEILLE 7-like
TrEMBL	B9N379	0.0	B9N379_POPTR; Uncharacterized protein
STRING	POPTR_0015s05430.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.2	4e-44	MYB_related family protein