PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG009880.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 376aa    MW: 42381 Da    PI: 6.0413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG009880.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.1e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++++G g+W+t ++  g+ R++k+c++rw +yl
      CCG009880.1 14 KGPWTPEEDQKLVDYIEKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding491.4e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +  eE+e +++++ +lG++ W++Ia++++ gRt++++k++w+++
      CCG009880.1  67 RGQFAFEEEETIIQLHSLLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      677778****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-26563IPR009057Homeodomain-like
PROSITE profilePS5129425.797965IPR017930Myb domain
SuperFamilySSF466895.62E-3211108IPR009057Homeodomain-like
SMARTSM007175.7E-141363IPR001005SANT/Myb domain
PfamPF002495.7E-171461IPR001005SANT/Myb domain
CDDcd001674.14E-131661No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2564116IPR009057Homeodomain-like
SMARTSM007174.1E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.65666116IPR017930Myb domain
PfamPF002492.1E-1467111IPR001005SANT/Myb domain
CDDcd001672.79E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRAPCCDKN GLKKGPWTPE EDQKLVDYIE KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGQF AFEEEETIIQ LHSLLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSILS SSPYNSSDHM NMSRMLGVQP LVNPGLLRLA TSLLSSQREQ  180
TQSFVIQNGQ EENHLSNPQV QQSQYQSMIH QANIQFQTSG QEMPTCTTMT TSPWVTFSNE  240
ARIMDPNVDQ YQSSTITNFS SPNSQLSTHD QWQNNGMGSN LTEDYYVPAV SSYNSNGYYG  300
SDLVDHSSET STFISNSSNQ NFGFASVLST PSSSPTPLNS NSTFINSSSA EDERESYCSN  360
ILKFEIPDIL DAINFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001151.10.0PREDICTED: protein ODORANT1
SwissprotQ9LDR81e-124MY102_ARATH; Transcription factor MYB102
TrEMBLB9H2080.0B9H208_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-104MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]