PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010029.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 211aa    MW: 23069.8 Da    PI: 9.7838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010029.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-192777256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+ta eAa+a+++a+++++g+
  CCG010029.2 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAVEAARAYDKAAREYRGA 77
                 69*******.**********8...557**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-222785IPR016177DNA-binding domain
CDDcd000182.64E-292784No hitNo description
SMARTSM003801.1E-342790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-322785IPR001471AP2/ERF domain
PfamPF008475.1E-132776IPR001471AP2/ERF domain
PROSITE profilePS5103223.1692784IPR001471AP2/ERF domain
PRINTSPR003671.0E-102839IPR001471AP2/ERF domain
PRINTSPR003671.0E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPKKLNGND NGSLKKASGD HDKKEIHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
VEAARAYDKA AREYRGAKAK TNFPLAEKVV DYEDEKQSSS QSSTVESSSS PVVSAVARDV  120
TRQVGGVVGM GMGRFPFVFQ QQQPNVNAVG PVWFLDSVKP EFGAQRFPVR FDPVGLESGA  180
HSDSDSSSVI DFKPRSSILD LDLNLPPPAD A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-212785564ATERF1
3gcc_A1e-212785564ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047675.11e-153PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A3N7FDB11e-118A0A3N7FDB1_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01110.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-39erf domain protein 9