PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010057.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 243aa    MW: 28619.1 Da    PI: 8.7328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010057.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-18449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W   Ede+l ++v+q+G+++W++Ia++++ gR++k+c++rw++ 
      CCG010057.1  4 RGHWRLAEDEKLRELVEQYGPHNWNSIAEKLQ-GRSGKSCRLRWFNQ 49
                     899*****************************.***********996 PP
2Myb_DNA-binding57.92.4e-185699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r ++T+eE+e+l+ +++ +G++ W+ Ia+ ++ gRt++ +k++w+ 
      CCG010057.1 56 RSPFTEEEEERLLACHRIHGNK-WAVIAKQFP-GRTDNAVKNHWHV 99
                     789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.763150IPR017930Myb domain
SMARTSM007178.6E-15352IPR001005SANT/Myb domain
PfamPF002497.0E-17449IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-30497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26557IPR009057Homeodomain-like
CDDcd001675.01E-13748No hitNo description
PROSITE profilePS5129425.19351105IPR017930Myb domain
SMARTSM007171.1E-1555103IPR001005SANT/Myb domain
PfamPF002498.8E-165698IPR001005SANT/Myb domain
CDDcd001672.15E-115898No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2258104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSSRGHWRLA EDEKLRELVE QYGPHNWNSI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEERLLAC HRIHGNKWAV IAKQFPGRTD NAVKNHWHVI MARRFRERSK IHAKRASQSL  120
LVNEQKPSFS NQDVRIMNRE PRNNAPSFVH KYFESYCDHY HHPFTPICKD LHNQNPSHCE  180
GKNQPLEFYD FLQVKTESSK SEVIDNARRD DVEVDQEAKE LPKSRDVFPF IDFLSAGNQV  240
SGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3141057108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707911e-156AB970791.1 Populus tremula x Populus tremuloides PtxtMYB175 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047715.10.0PREDICTED: transcription factor WER-like
SwissprotQ6R0C41e-83MYB52_ARATH; Transcription factor MYB52
TrEMBLB9HGW91e-170B9HGW9_POPTR; MYB family protein
STRINGPOPTR_0012s03650.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-86myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]