PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010086.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 429aa    MW: 48094.5 Da    PI: 5.9495
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010086.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.5e-18181227148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTteEd ll+++v+q+G + W+ +a+++  gR +kqc++rw+++l
      CCG010086.1 181 KGQWTTEEDRLLIQLVEQYGVRKWSDVAKMLS-GRIGKQCRERWHNHL 227
                      799*****************************.*************97 PP
2Myb_DNA-binding551.9e-17233275145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W+ eEd+ l++a+  lG++ W+ Ia++++ gRt++++k++w+
      CCG010086.1 233 KDAWSVEEDKVLIQAHSVLGNR-WAEIAKRLP-GRTENSIKNHWN 275
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.067176231IPR017930Myb domain
SuperFamilySSF466896.47E-32179274IPR009057Homeodomain-like
SMARTSM007174.4E-17180229IPR001005SANT/Myb domain
PfamPF002493.3E-17181227IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-27182234IPR009057Homeodomain-like
CDDcd001676.15E-16184227No hitNo description
PROSITE profilePS5129421.558232282IPR017930Myb domain
SMARTSM007177.4E-17232280IPR001005SANT/Myb domain
PfamPF002498.3E-16233275IPR001005SANT/Myb domain
CDDcd001672.95E-13235278No hitNo description
Gene3DG3DSA:1.10.10.604.9E-22235280IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MFLSSKACIE EEYFPFETPC PSSTGFLQGF SHLDDHDNAN GSSSNPLFGV QTGSNFDSFD  60
AFPYGPSSNI DLYDYECKPF AGNINGGRGH GQVNDNFQIS GGYSNLSSQR NSIDEIGSNQ  120
GHTSLSFEEA KPVSFDAQDE VSCVGTAENE CKNNMGLNMT STLLPLARKT WKGRTKNSVV  180
KGQWTTEEDR LLIQLVEQYG VRKWSDVAKM LSGRIGKQCR ERWHNHLRPD IKKDAWSVEE  240
DKVLIQAHSV LGNRWAEIAK RLPGRTENSI KNHWNATKRK QYSKRKCRPK YPRATLLQDY  300
IKSLNSNSGT TWQGHGITTA STAADVIPDN TANKKAPEQQ DLVHFKDNDG GLVPFYSFSE  360
VPDFDIQEKM FQGGCSVDSI LDGLPCDHSS VHEKRLEMKV PEQDYATPFM GFEVEKEVDL  420
VEMISQSKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-461792812104C-Myb DNA-Binding Domain
1msf_C2e-461792812104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001544.10.0PREDICTED: transcription factor MYB98-like
TrEMBLA0A2K1YAQ80.0A0A2K1YAQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s08360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-89myb domain protein 98