PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010163.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 418aa    MW: 48450.4 Da    PI: 6.0381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010163.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-17173219148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd ll+++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
      CCG010163.1 173 KGQWTAEEDSLLIRLVDEFGIRKWSHIAQILP-GRIGKQCRERWHNHL 219
                      799*****************************.*************97 PP
2Myb_DNA-binding53.26.8e-17227267345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W++eEd  l++a+k+ G++ W+ Ia+ ++ gRt++++k++w+
      CCG010163.1 227 IWSEEEDRVLIQAHKEIGNK-WAEIAKSLP-GRTENSIKNHWN 267
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.305168223IPR017930Myb domain
SuperFamilySSF466891.11E-31170266IPR009057Homeodomain-like
SMARTSM007171.2E-15172221IPR001005SANT/Myb domain
PfamPF002495.5E-16173219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-28174226IPR009057Homeodomain-like
CDDcd001678.75E-15176219No hitNo description
PROSITE profilePS5129420.775224274IPR017930Myb domain
SMARTSM007175.5E-16224272IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21227272IPR009057Homeodomain-like
PfamPF002493.2E-15228267IPR001005SANT/Myb domain
CDDcd001677.01E-13228270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MFSPDNYLRK PYMKEYVFPC ETPSAKSFLQ DFNHLDQLHA NRSLYGVLTG SNSGSLDEFP  60
YRLSPASHLY ECDYKPYTNN NNGLYGRDNF QSSGCLNLPQ ENIIDMIGPN QSHMSLNLQE  120
TKPMNIEVLD GTPCVSTKYD YYTKGGLYKN DAILPLTRRT GKTPKKETTN VVKGQWTAEE  180
DSLLIRLVDE FGIRKWSHIA QILPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDRVLIQAH  240
KEIGNKWAEI AKSLPGRTEN SIKNHWNATK RRQTCTSKRK SRSKYPKGSL LQEYIKSLNL  300
DSIPKVKRRQ RRRRTPKYPD AIIGSSTTMK EPGDEQPQQD LNLCENNDGP VLHYDFDEIP  360
DFDFDETIFQ DGSSIDSLLD EIDCDPVVNE KVLDMEVPRA DEIPFQDFEM MDEVDLWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-441712742105C-Myb DNA-Binding Domain
1msf_C2e-441712742105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305311VKRRQRR
2306313KRRQRRRR
3307312RRQRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042156.10.0PREDICTED: transcription factor MYB98-like
TrEMBLB9MXK40.0B9MXK4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-76myb domain protein 98