PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010182.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 208aa MW: 22471.4 Da PI: 7.34

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010182.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.2	3.6e-30	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ Cvl+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++l+q+++e CCG010182.2 2 SCNGCRVLRKGCSETCVLRSCLhwiptPEAQGNATLFLAKFFGRSDLISLISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLWSGNWHLCQAAVE 99 6**********************9999*****************************************************************99 PP DUF260 94 lallke 99 +l +e CCG010182.2 100 SVLSGE 105 887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.494	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-25	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR SCLHWIPTPE AQGNATLFLA KFFGRSDLIS LISAVPESQR 60 PVLFQSLLFE ACGRTVNPVN GAVGLLWSGN WHLCQAAVES VLSGETLRPL PGILTGVLAQ 120 NCDESSDSFS AAAYAVHSMT WNQSKPFDKE NNNQVVSDHH VNLCLARGSG GRDKRGRDAV 180 SFYTGGESET TSFESSGADK KKLLNLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028812.1	1e-153	PREDICTED: LOB domain-containing protein 39-like
Swissprot	Q9SZE8	6e-62	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	B9IBU3	1e-137	B9IBU3_POPTR; LBD family protein
STRING	POPTR_0014s01770.1	1e-138	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	3e-64	LOB domain-containing protein 39