PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010228.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 360aa    MW: 39934.2 Da    PI: 9.7925
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010228.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.5e-29288345359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYege nh+
  CCG010228.1 288 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDSMMLIVTYEGEPNHS 345
                  99************************988************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.9E-17239284IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.0E-31274347IPR003657WRKY domain
PROSITE profilePS5081130.205281347IPR003657WRKY domain
SuperFamilySSF1182901.57E-24284347IPR003657WRKY domain
SMARTSM007748.8E-34286346IPR003657WRKY domain
PfamPF031064.2E-24288344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAVELMMGYS GDSFATKMQE NDVREAATAG IQSVEEVIKL LKQNQLEQQQ KQQYYQELSA  60
ASSSSNLGTD NIMAVTDMAV NNFKKVISLL GRTTRTGHAR FRRAPVACPP QQQIPEPEPE  120
PQQQKQQVQE PVPYVRAINS QPTEQGSAFR VYQPTPIHRL PPLPHNQQQK TLLVTKNGLS  180
DRNEMATTIS FSNSPTISAR TSFLSSLTGE TDSFQRSVSS GFQFTQPSAG KPPLSSSFKR  240
KCNSMDDAAL KCGSSSSRCH CSKKRKSRIK RMVRVPAISS KMADIPPDDY SWRKYGQKPI  300
KGSPHPRGYY KCSSVRGCPA RKHVERALDD SMMLIVTYEG EPNHSHPIDE APGALVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21274347274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774340.0GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029401.10.0PREDICTED: probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-113WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2K1XPD00.0A0A2K1XPD0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.16e-94WRKY DNA-binding protein 7