PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010237.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 419aa MW: 47816.1 Da PI: 7.4121

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010237.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	166	189	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H CCG010237.2 166 YVCGVCGRKCKTNLDLKKHFKQlH 189 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00678	0	82	96	IPR019775	WD40 repeat, conserved site
Gene3D	G3DSA:3.40.50.1010	2.4E-6	86	156	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.679	166	194	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	168	189	IPR007087	Zinc finger, C2H2
CDD	cd06167	7.16E-13	180	320	No hit	No description
Gene3D	G3DSA:3.40.50.1010	2.4E-6	251	316	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MTPLCKAIDT TTASLLKPSI LLHRTPLNFC HSLNYTPNLS SSNLALTSKP PQTHLRPITA 60 TANASHPAAT SEIDMVKNRQ GIYTSKQNKV VVLWDLDNKP PRGPPYPAAV ALKTVAQRFG 120 EVIDMCAYAN RHAFIHLPHW VLEERRERKH LDILERKEIV SPSQPYVCGV CGRKCKTNLD 180 LKKHFKQLHE RERQKKVNRM RSLKGKKRQR YKERFVSGNH KYNEEARRLL TPKIGYGLAA 240 ELRRAGVYVK TVEDKPQAAD WALKRQIEHS MSRGVDWLVL VSDDSDFSEI LRKAREANLG 300 TVVVGDRDRA LGRHADLWVP WIGVENGELT EKDLVPKSRW RSEDLENDGG LFSVTDFDED 360 GDYGGNDLEG FVDGLVMARS GFNGTRISAF SEGEEEHEQD YLLYDSEYEE IEFEDEGFW

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MTPLCKAIDT TTASLLKPSI LLHRTPLNFC HSLNYTPNLS SSNLALTSKP PQTHLRPITA  60
TANASHPAAT SEIDMVKNRQ GIYTSKQNKV VVLWDLDNKP PRGPPYPAAV ALKTVAQRFG  120
EVIDMCAYAN RHAFIHLPHW VLEERRERKH LDILERKEIV SPSQPYVCGV CGRKCKTNLD  180
LKKHFKQLHE RERQKKVNRM RSLKGKKRQR YKERFVSGNH KYNEEARRLL TPKIGYGLAA  240
ELRRAGVYVK TVEDKPQAAD WALKRQIEHS MSRGVDWLVL VSDDSDFSEI LRKAREANLG  300
TVVVGDRDRA LGRHADLWVP WIGVENGELT EKDLVPKSRW RSEDLENDGG LFSVTDFDED  360
GDYGGNDLEG FVDGLVMARS GFNGTRISAF SEGEEEHEQD YLLYDSEYEE IEFEDEGFW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011029510.1	0.0	PREDICTED: uncharacterized protein LOC105129232
TrEMBL	U5FNF9	0.0	U5FNF9_POPTR; Uncharacterized protein
STRING	POPTR_0014s02520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6441	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-160	C2H2-like zinc finger protein