PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010245.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 251aa    MW: 27757.5 Da    PI: 7.1961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010245.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-134588855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  Er RR+++++ f+ L  llP++      K +K++i+ +Av+YIk Lq
  CCG010245.1 45 TERERRKKMRNMFSSLHALLPQL----PAKADKSSIVDEAVKYIKTLQ 88
                 6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.42E-113684No hitNo description
SuperFamilySSF474593.01E-163699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2533787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-154199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-104588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-104593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.16E-6170244No hitNo description
CDDcd048731.45E-4175209No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-4177247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDTEIPAEAV VPGQKRSRKG GDARNKKVVN GGGSGESEHE IHIWTERERR KKMRNMFSSL  60
HALLPQLPAK ADKSSIVDEA VKYIKTLQQT LQTLQKQNVE KFQGAIIDYE PSVITSLTDT  120
VGSREASFAA LGPSKNFPLT SKVSQNSFSV SLSPACFQTW FSPNVVMNMC GDDAQFSLCS  180
TRKPGLLATI LYILEKHNLD VVSAHISSDQ YRSIYMIHVH ADGASDQYPE AMSVEDTFKL  240
AAGEMNLWVM S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4465915e-35AM446591.2 Vitis vinifera contig VV78X122741.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029593.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLB9MVT41e-172B9MVT4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02600.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-42bHLH family protein