PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010286.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 212aa    MW: 23871.7 Da    PI: 10.4986
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010286.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15112202198
                  EEEE-..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+k + +s+v+   rl  lp +f++++   ++++  +tl de+  +++v++    +  + vl++GWk+F+ a+gL +gD vvF+l++   ++++v ++
  CCG010286.1 112 FIKSMFQSHVTGGFRLgGLPVDFCRRNF--PRRGDFITLIDEDAVEYRVTY--LAR--ENVLGGGWKGFAVAHGLLDGDAVVFQLIK--PTTCKVYII 201
                  89***********99989*********6..446668***************..333..468***********************997..555678877 PP

                  - CS
           B3  98 r 98 
                  r
  CCG010286.1 202 R 202
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-20106205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-18106204IPR015300DNA-binding pseudobarrel domain
CDDcd100179.38E-23110202No hitNo description
SMARTSM010192.0E-17112204IPR003340B3 DNA binding domain
PfamPF023623.9E-13112202IPR003340B3 DNA binding domain
PROSITE profilePS5086310.63113204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEENKKRMEA LNLPKLCQAL KIPNRTKSSP MKRSKPRVVE KQVVVVRRSN RVANKPAPFF  60
EEAVLDRVVK PRRISKVTDF SNLVFATDEA RAKAIEKAEK LQSDLGSDYP TFIKSMFQSH  120
VTGGFRLGGL PVDFCRRNFP RRGDFITLID EDAVEYRVTY LARENVLGGG WKGFAVAHGL  180
LDGDAVVFQL IKPTTCKVYI IRVNGSEQGN SL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469780.0EF146978.1 Populus trichocarpa clone WS01225_L06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030161.11e-156PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
RefseqXP_011030170.11e-156PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
SwissprotQ9FMZ41e-57Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLU5FTX01e-124U5FTX0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03120.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-49B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]