PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG010324.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 217aa MW: 23878.8 Da PI: 6.8663

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG010324.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.6e-32	12	65	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ CCG010324.2 12 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 65 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.78E-16	9	66	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-28	10	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	12	65	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	13	64	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MINGVKRSVR APRMRWTTTL HAHFVHAVQL LGGHERATPK SVLELMNVKD LTLAHVKSHL 60 QMYRTVKSTD RGSGQELTDM GLSQRAGILE VDALGLSSGK ADANNLPQPL NNPPPPPPPL 120 SSIQKNQRNS GPSSMEGDEK NISSLEALTY FNFEAHDHSK EDGHTEALHM AANLKERLDS 180 SSSSSSDMSL NLEFTLGRPS WQLDYAETTN ELTLLKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	13	67	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	13	67	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	13	67	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	13	67	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	13	67	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	13	67	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	13	67	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	13	67	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	13	67	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	13	67	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	13	67	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	13	67	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP271990	0.0	KP271990.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-293 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030894.1	1e-158	PREDICTED: probable transcription factor KAN4
Swissprot	Q9FJV5	2e-56	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A2K1XQ13	1e-121	A0A2K1XQ13_POPTR; Uncharacterized protein
STRING	XP_002510296.1	6e-91	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4463	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	2e-56	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]