PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010468.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 261aa    MW: 28698.6 Da    PI: 6.1671
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010468.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1886135255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a ++++g
  CCG010468.1  86 TYRGVRMRS-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKG 135
                  69****998.**********843...6*******************99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-2186144IPR016177DNA-binding domain
PROSITE profilePS5103222.81386143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3186144IPR001471AP2/ERF domain
SMARTSM003803.5E-3486149IPR001471AP2/ERF domain
PfamPF008478.5E-1386135IPR001471AP2/ERF domain
PRINTSPR003672.1E-108798IPR001471AP2/ERF domain
CDDcd000183.50E-3187145No hitNo description
PRINTSPR003672.1E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGKHIILETD AQDNSLTSSS TTTTTASSSS SSFSTTISST DRISKKEENS IADPKGSRKS  60
QELQSGNEGN KRRKTTGNQT NGKHPTYRGV RMRSWGKWVC EIREPRKKSR IWLGTYPTAE  120
MAARAHDVAS LAIKGGSAYL NFPELVDELP RPLSKSPKDI QAAAAKAAAA SFPETRHCDA  180
EADLSHAELN VSNLSDNLAM YNTQESSSSP STDVDDKLFD LPDLFIDGVN HSDGFCYYSP  240
PWQLCSADTG FRLEEPFLWE H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1777143572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559290.0EF155929.1 Populus trichocarpa TINY-like protein (TINYL10) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032938.10.0PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ77e-70ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA9PL791e-151A9PL79_POPTR; TINY-like protein
STRINGPOPTR_0014s05500.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-68ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]